DNA dC->dU-editing enzyme APOBEC-3G (APOBEC-related cytidine deaminase, ARCD, APOBEC-related protein, apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 3g, phorbolin-like protein MDS019, dj494g10.1, FLJ12740, ARP-9, CEM15, CEM-15, APOBEC3G)
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Function
- DNA deaminase (cytidine deaminase)
- mediates a form of innate resistance to retroviral infections (at least to HIV-1infection) by triggering G-to-A hypermutation in the newly synthesized viral DNA
- replacements C-to-U in the minus strand DNA of HIV-1 during reverse transcription, leads to G-to-A transitions in the plus strand
- inhibition of viral replication is either due to degradation of minus strand before its integration or to lethality of the hypermutations
- modification of both DNA strands is not excluded
- antiviral activity is neutralized by the virion infectivity factor (VIF), that prevents the incorporation of APOBEC3G into progeny HIV-1 virions by both inhibiting its translation &/or by inducing its ubiquitination & subsequent degradation by the 26S proteasome
- APOBEC3G binds a variety of RNAs, but does not display detectable APOB, NF1 & NAT1 mRNA editing
- interacts with APOBEC3B, APOBEC3F & HIV-1 VIF (species specific)
- ubiquitinated in the presence of HIV-1 VIF
- inhibits also infectivity of retroviral particles only distantly related to HIV-1, such as the simian immunodeficiency virus (SIV), the equine infectious anemia virus (EIAV) & the murine leukemia virus (MLV)
Structure
- homodimer
- belongs to the cytidine and deoxycytidylate deaminase family
Compartment
- cytoplasm, nucleus
- mainly cytoplasmic, small amount are found in nucleus
- during HIV-1 infection, virion-encapsidated in absence of HIV-1 VIF
Alternative splicing
named isoforms=3
Expression
- expressed in spleen, testes, ovary, peripheral blood leukocytes & CD4+ lymphocytes
- also expressed in non-permissive peripheral blood mononuclear cells, & several tumor cell lines
- no expression detected in permissive lymphoid & non-lymphoid cell lines
Genetics
- 1 of 7 related genes or pseudogenes found in a cluster, thought to result from gene duplication, on chromosome 22
More general terms
References
- ↑ UniProt http://www.uniprot.org/uniprot/Q9HC16.html
- ↑ Protein Spotlight, Protein wars - Issue 45 of April 2004 http://www.expasy.org/spotlight/back_issues/sptlt045.shtml