replication-associated protein; rep; ATP-dependent helicase rep; repP (Rep)

From Aaushi
Jump to navigation Jump to search

Function

  • essential for the replication of viral ssDNA.
  • the closed circular ssDNA genome is first converted to a superhelical dsDNA.
  • rep &/or rep' binds a specific hairpin at the genome origin of replication.
  • introduces an endonucleolytic nick within the conserved sequence 5'-AGTATTAC-3' in the intergenic region of the genome, thus initiating rolling circle replication
  • following cleavage, binds covalently to the 5'-phosphate of DNA as a tyrosyl ester.
  • the cleavage gives rise to a free 3'-OH that serves as a primer for the cellular DNA polymerase
  • the polymerase synthesizes the (+) strand DNA by rolling circle mechanism
  • after one round of replication, a rep-catalyzed nucleotidyl transfer reaction releases a circular single-stranded virus genome, thereby terminating replication
  • origin-specific DNA cleavage, & nucleotidyl transferase
Cofactors: Mg+2, Mn+2

ATP + H20 = ADP + HPO4- + H+ Structure:

  • there are 3 rolling circle replication (RCR) motifs.
  • RCR-2 is probably involved in metal coordination
  • RCR-3 is required for phosphodiester bond cleavage for initiation of RCR
  • belongs to the nanoviruses/circoviruses replication-associated protein family Compartment:
  • host nucleus

More general terms

References

Database